Trinity, developed at the Broad Institute and the Hebrew University of Jerusalem, represents a novel method for the efficient and robust de novo reconstruction of transcriptomes from RNA-seq data. Trinity combines three independent software modules: Inchworm, Chrysalis, and Butterfly, applied sequentially to process large volumes of RNA-seq reads. Trinity partitions the sequence data into many individual de Bruijn graphs, each representing the transcriptional complexity at at a given gene or locus, and then processes each graph independently to extract full-length splicing isoforms and to tease apart transcripts derived from paralogous genes.
This product is generally distributed as a freeware / public license. This means the software is free for anyone to download and use.
Versions of this software are available on: Linux, the Palmetto Cluster. You may have to check with the vendor about the availability of other versions.
You can obtain this title for free from the vendor.
Install Media - How to Access Trinity
Install media for this title should be obtained from the vendor's website.
If you have any additional questions about the availability, cost, or install procedures for this software, you can either visit the CCIT Support Center on the 2nd floor of Cooper Library or send an email to firstname.lastname@example.org.
Faculty and staff can also contact their local IT support for help.